This is a planning tool then, right?
So it's about the kind of AP you plan to deploy.
If you use a value of 50mW transmit power then that means you're expecting 3dB worth of line, connector and "other" losses to end up w/ 100mW EIRP on a 6dB antenna.
3dB of losses sounds like a lot. (especially assuming your antennas are integrated or connected directly to your AP)
You'd be much safer with the 25mW transmitter-power figure.
I figure connector losses (for RP-SMA?) to be someting like .2dB at 2.4Ghz, and .4dB at 5Ghz.
If you assume connector losses weren't accounted for when calculating the gain of your antennas, then to overcome that you could bump your transmit power up to 26mW in the 2.4Ghz band and maybe 27mW in the 5Gig band.
(if your APs have that kind of resolution in their power output)
You aren't using antenna cables, right?
If you were, you could do a calculation to compensate for those losses.
..but does your software really simulate those losses?
Probably not.
That means sticking w/ 25mW transmit power, or 100mW EIRP.
In fact, you might want to simulate w/ less than 100mW EIRP to give you a margin of (coverage) safety in your plans.
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Wow. 100mW legal limit?
That's less than a "standard" linksys device in the US. (at about 250mW)
..and 100mW EIRP?
Sounds like a pretty severe limitation.
There's regulation limiting most wifi devices to 1000mW in the US.
Ruckus gets around that by way of it's directivity. (that type of system has higher limits)
I don't know what country you're in but if you were using the Ruckus gear that I use here, you'd have to manually configure each AP to be "down" by 14db. (for a 7982)
... and the most my controller allows me to adjust down is 10db.
So.. you either don't (can't?) use the 7982 there, or the 7982/controller that's sold in your country is a different version. (to meet a 100mW EIRP spec)